Early Detection Research Network

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.

The open-source Computational Proteomics Analysis System (CPAS) contains an entire data analysis and management pipeline for Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) proteomics, including experiment annotation, protein database searching and sequence management, and mining LC-MS/MS peptide and protein identifications. CPAS architecture and features, such as a general experiment annotation component, installation software, and data security management, make it useful for collaborative projects across geographical locations and for proteomics laboratories without substantial computational support.

Bellew M, Detter A, Eng J, Faca V, Fang R, Fitzgibbon M, Gafken P, Hanash S, Holzman T, Hussey P, Igra M, Lin CW, Maclean B, McIntosh MW, Paulovich A, Rauch A, States D, Whitaker J, Whiteaker J, Zhang H

16396501

J. Proteome Res., 2006, 5 (1)